FTP Trojan is one of the spyware which may run in user desktop PC background and capture FTP credentials (username/password).

Ref.:
http://searchsecurity.techtarget.com/news/1360524/New-Trojan-stealing-FTP-credentials-attacking-FTP-websites

If your website is unforunately modified, you need to do the following in sequence –

  1. Reset your DirectAdmin, FTP password
  2. Scan your desktop PC/notebook for any virus/spyware/Trojan
  3. Delete the current web page, and re-upload it.

Other Related Information –
http://en.wikipedia.org/wiki/Gumblar

Below is one of the example trojan –

ftp_trojan_nod32

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